Please can anyone help me to visualize and analyze the SPAdes result?===== Assembling finished. Used k-mer sizes: 21, 33, 55, 77
- Corrected reads are in /home/pc30/SPAdes/roopa/corrected/
- Assembled contigs are in /home/pc30/SPAdes/roopa/contigs.fasta
- Assembled scaffolds are in /home/pc30/SPAdes/roopa/scaffolds.fasta
- Assembly graph is in /home/pc30/SPAdes/roopa/assembly_graph.fastg
- Assembly graph in GFA format is in /home/pc30/SPAdes/roopa/assembly_graph_with_scaffolds.gfa
- Paths in the assembly graph corresponding to the contigs are in /home/pc30/SPAdes/roopa/contigs.paths
- Paths in the assembly graph corresponding to the scaffolds are in /home/pc30/SPAdes/roopa/scaffolds.paths
======= SPAdes pipeline finished.
I got this in the terminal. But where do i get the total number of contigs, scaffolds count and all?