Question: How to highlight regions in RNA second structure
gravatar for biolab
14 months ago by
biolab1.1k wrote:

Dear All,

I have many miRNA precursor sequences, and it is easy to get the pictures of their secondary structures in batch using RNAFOLD, MFOLD or other tools. My problem is: how to highlight or label a region (for example, miRNA or miRNA*) in the RNA structure graph by customized color?

Thank you very much for your suggestions!

rna second structure • 438 views
ADD COMMENTlink written 14 months ago by biolab1.1k

I did it some long time ago with Vienna package. They have a script to paint RNA structure according to some measure, I changed the script to read custom input.

ADD REPLYlink written 14 months ago by Asaf5.5k
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