Question: How to highlight regions in RNA second structure
0
gravatar for biolab
14 months ago by
biolab1.1k
biolab1.1k wrote:

Dear All,

I have many miRNA precursor sequences, and it is easy to get the pictures of their secondary structures in batch using RNAFOLD, MFOLD or other tools. My problem is: how to highlight or label a region (for example, miRNA or miRNA*) in the RNA structure graph by customized color?

Thank you very much for your suggestions!

rna second structure • 438 views
ADD COMMENTlink written 14 months ago by biolab1.1k

I did it some long time ago with Vienna package. They have a script to paint RNA structure according to some measure, I changed the script to read custom input.

ADD REPLYlink written 14 months ago by Asaf5.5k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1872 users visited in the last hour