Perl error: Can't locate bioUtils.pm in @INC (you may need to install the bioUtils module)

Question

[arsilan324]

Hi all, I have gff3 file which I annotated using Dammit annotation pipeline but it has poor annotation order. I found this script which appears to me very appealing but unable to run it. The script gives me this error. I have installed bioUtils already.

Can't locate bioUtils.pm in @INC (you may need to install the bioUtils module) (@INC contains: /Users/arslan/Documents/Juncus/EMBL/EMBLmyGFF3/../lib /Library/Perl/5.18/darwin-thread-multi-2level /Library/Perl/5.18 /Network/Library/Perl/5.18/darwin-thread-multi-2level /Network/Library/Perl/5.18 /Library/Perl/Updates/5.18.2/darwin-thread-multi-2level /Library/Perl/Updates/5.18.2 /System/Library/Perl/5.18/darwin-thread-multi-2level /System/Library/Perl/5.18 /System/Library/Perl/Extras/5.18/darwin-thread-multi-2level /System/Library/Perl/Extras/5.18 .) at correct_gff_feature_order.pl line 76.
BEGIN failed--compilation aborted at correct_gff_feature_order.pl line 76.

Can you please comment how can I fix it?

Thanks

Answer 1

[lieven.sterck]

make sure you installed the bioUtils.pm in the correct place. Did you install it using cpan? Can you confirm the bioUtils is present in one of the folders mentioned in the (@INC contains .... ) list?