Question: Gene List and Orthologs
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gravatar for shahroze786
10 months ago by
shahroze7860 wrote:

Currently looking for advice on the best way to collect orthology data for E. Coli. I haven't used OMA before but the goal is to basically acquire a gene list for all E. Coli strains then map those genes to Orthology IDs. I downloaded the AllAll data from OMA for the E. Coli strains but there's a lot available in the download and I'm having some difficulties dissecting through the info. Does OMA provide simply a way to collect a gene list and the corresponding orthology groups? If this info isn't already available I don't mind carrying out the necessary steps of course, but just need to be pointed in the right direction.

e. coli oma orthologs • 308 views
ADD COMMENTlink modified 10 months ago by genomax59k • written 10 months ago by shahroze7860
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gravatar for genomax
10 months ago by
genomax59k
United States
genomax59k wrote:

Take a look at Prokaryotic Genome Analysis Tool (PGAT). Here is an example of orthologs for dnaK from E. coli.

ADD COMMENTlink modified 10 months ago • written 10 months ago by genomax59k
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