Entering edit mode
6.1 years ago
dec986
▴
370
Hello,
I'm looking at STAR's --quantMode TranscriptomeSAM
option, and am puzzled, should I use TranscriptomeSAM
for input into featureCounts, or should I use the Aligned.sortedByCoordinate.out.bam
file output by STAR for input into featureCounts?
I already get the counts from --quantMode GeneCounts
I don't see the purpose of TranscriptomeSAM
.
thanks