Hi, I'm using OMA (https://omabrowser.org/oma/genomePW/) to find orthologues between bacterial species and I'm having trouble retrieving gene names that can be matched to those in the corresponding genbank file, whether it be refseq IDs, gene names, etc. For example: Bacillus subtilis 168 vs. Bacillus thuringensis Al Hakam yields:
OMA data line:
BACSU00001 BACAH00001 1:1 769903 > OMA specific naming system?
OMA source data IDs:
dnaA dnaA 1:1 769903 > gene names are not available for many of these genes in the Bt genbank file so this isn't a usable format
OMA "Refseq IDs":
NP_387882.1 BACAH00001 1:1 769903 > not actual refseq IDs
OMA "Ensemble Gene IDs":
939978 BACAH00001 1:1 769903 > again, not actual IDs
Actual corresponding locus tags (The data I'm trying to collect):
Without matching gene IDs, I can't really use the lovely data you guys have compiled. I figured others might be in the same boat. Also, in case other people need data in the same format as I do, http://www.pathogenomics.sfu.ca/ortholugedb/ has been helpful. Cheers!