How to go from proteome of species A and compare genes to species B
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5.6 years ago
hudak7 • 0

I have a transcriptome of a parasite (B) and want to do a dN/dS analysis. I have downloaded the FASTA file of the proteins for the parasite (A) I wish to compare mine with. I know I must use the proteome of A to find orthologs, but I am confused of how to use my transcriptome to find the orthologs since I do not have the proteome of B nor is it available online.

RNA-Seq orthologous pairs orthoMCL proteome dN/dS • 1.1k views

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