Question: Are Provean-SIFT-results consistent with SIFT-original-results?
0
gravatar for Mikee
17 months ago by
Mikee0
Germany Nuremberg
Mikee0 wrote:

Hello,

Since I encountered problems on the mainpage of SIFT (http://sift.bii.a-star.edu.sg/) I wanted to know if the SIFT-predictions shown within PROVEAN are a correct substitute-source? (http://provean.jcvi.org/genome_submit_2.php?species=human)

This peculiar Question arises through my finding that I see different result-values for the same variant in different sites/programms (e.g. VariantEffectpredictor, VarSeq and so on). Maybe its due to different used freezes of SIFT? I see the same for Polyphen2-results.

Thank you very much for your help, kind regards, Michael

in silico prediction • 445 views
ADD COMMENTlink modified 12 weeks ago by prosium0 • written 17 months ago by Mikee0
0
gravatar for Mikee
17 months ago by
Mikee0
Germany Nuremberg
Mikee0 wrote:

Sorry, one correction: I ment Varsome not VarSeq, my bad

ADD COMMENTlink written 17 months ago by Mikee0
0
gravatar for prosium
12 weeks ago by
prosium0
prosium0 wrote:

i got the error you said too. it's different sift-4G score and annovar-sift score. How would you do that?

ADD COMMENTlink written 12 weeks ago by prosium0
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