MACS's option corresponding to HOMER's -sspe
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3.7 years ago

HOMER provides "-sspe" option if your reads are strand-specific paired-end. HOMER will interpret the intended strand for the 2nd read in the mate-pair.

How does MACS handle "strand-specific" PE reads? Does "-f BAMPE" also handle SS-PE ?

ChIP-Seq HOMER MACS strand-specific Paired-end • 685 views
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