Question: best and easy Germline CNV caller with WES
0
gravatar for jonessara770
9 months ago by
jonessara770130
jonessara770130 wrote:

Hi all,

I would like to check the presence of germline CNV in my samples. I wonder what are the best germline CNV callers using WES data ? Please share your experiances

Thanks in advance

Sara

whole exome seq • 493 views
ADD COMMENTlink written 9 months ago by jonessara770130
1

We've used XHMM. It works with DepthOfCoverage data generated using GATK.

ADD REPLYlink written 9 months ago by RamRS19k

Thanks! isn't it difficult to run?

ADD REPLYlink written 9 months ago by jonessara770130

Is it? I think Menachem pretty much walks you through the entire process in the manual.

ADD REPLYlink written 9 months ago by RamRS19k
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