Question: best and easy Germline CNV caller with WES
0
gravatar for jonessara770
6 months ago by
jonessara770100
jonessara770100 wrote:

Hi all,

I would like to check the presence of germline CNV in my samples. I wonder what are the best germline CNV callers using WES data ? Please share your experiances

Thanks in advance

Sara

whole exome seq • 340 views
ADD COMMENTlink written 6 months ago by jonessara770100
1

We've used XHMM. It works with DepthOfCoverage data generated using GATK.

ADD REPLYlink written 6 months ago by Ram17k

Thanks! isn't it difficult to run?

ADD REPLYlink written 6 months ago by jonessara770100

Is it? I think Menachem pretty much walks you through the entire process in the manual.

ADD REPLYlink written 6 months ago by Ram17k
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