Question: best and easy Germline CNV caller with WES
0
gravatar for jonessara770
11 days ago by
jonessara77040
jonessara77040 wrote:

Hi all,

I would like to check the presence of germline CNV in my samples. I wonder what are the best germline CNV callers using WES data ? Please share your experiances

Thanks in advance

Sara

whole exome seq • 66 views
ADD COMMENTlink written 11 days ago by jonessara77040
1

We've used XHMM. It works with DepthOfCoverage data generated using GATK.

ADD REPLYlink written 11 days ago by Ram13k

Thanks! isn't it difficult to run?

ADD REPLYlink written 11 days ago by jonessara77040

Is it? I think Menachem pretty much walks you through the entire process in the manual.

ADD REPLYlink written 11 days ago by Ram13k
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