best and easy Germline CNV caller with WES
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6.4 years ago
jonessara770 ▴ 240

Hi all,

I would like to check the presence of germline CNV in my samples. I wonder what are the best germline CNV callers using WES data ? Please share your experiances

Thanks in advance

Sara

whole exome seq • 2.3k views
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We've used XHMM. It works with DepthOfCoverage data generated using GATK.

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Thanks! isn't it difficult to run?

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Is it? I think Menachem pretty much walks you through the entire process in the manual.

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