What are the step for germline analysis with CNVKit?
0
2
Entering edit mode
6.4 years ago
jonessara770 ▴ 240

Hello,

I would like to call CNV on germline samples with CNVKit. the documentation for CNV calling from germline is a bit confusing. could you please give me a step by step instruction to run CNVkit on germline WES data?

Thanks sara

whole exome sequneing • 1.8k views
ADD COMMENT
0
Entering edit mode

I see you've given up on XHMM already :-)

ADD REPLY
0
Entering edit mode

No, I would like to try some of them and compare the results. XHMM installation is very difficult!

ADD REPLY
0
Entering edit mode

Oh I see. We have an HPC where it's installed, but I guess installation from scratch might be difficult. No docker images?

ADD REPLY

Login before adding your answer.

Traffic: 1622 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6