Question: Retrieval of batch info for GSE46691
0
gravatar for jxee09
9 days ago by
jxee090
jxee090 wrote:

Can anyone tell how to retrieve batch id for samples within the GEO dataset of GSE46691 please?Thanks

rna-seq • 113 views
ADD COMMENTlink modified 9 days ago by dario.garvan400 • written 9 days ago by jxee090

By batch id you mean batch download? If yes, then read How to download raw data in batch from NCBI based on Series Accession number or Platform ID.

ADD REPLYlink written 9 days ago by h.mon11k

No, the dataset consists of hundreds of microarrays, which were run at different times. Hence, batch effect correction is an important consideration for the analysis of them.

ADD REPLYlink written 9 days ago by dario.garvan400
1
gravatar for dario.garvan
9 days ago by
dario.garvan400
Australia
dario.garvan400 wrote:

The submitter didn't provide the batch identifier of the batch each sample was run in, so it can't simply be downloaded from GEO Browser. It might be obtainable if you contact the corresponding author and ask for it.

ADD COMMENTlink written 9 days ago by dario.garvan400
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