Question: Gene Ontology Terms List
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gravatar for vipulbatra.pu
10 months ago by
vipulbatra.pu0 wrote:

I am new to GO analysis and someone helped to generate a list as given below. I am wondering how to generate such a file since I wasn't able to search GO terms individually as depicted in the file. I can mine the main GO terms through UniProt, however, for a list of all proteins the complete set GOs depicted as TRUE/FALSE is something I am not able to produce by myself. Please help

GO terms' list

gene ontology • 359 views
ADD COMMENTlink modified 10 months ago by genomax59k • written 10 months ago by vipulbatra.pu0

Hi,

Not able to see the mentioned list. What is the study model organism?

ADD REPLYlink written 10 months ago by Puli Chandramouli Reddy150

https://ibb.co/ntiKan https://ibb.co/dr3Kan

ADD REPLYlink written 10 months ago by vipulbatra.pu0

Have you taken a look at DAVID? - Database for Annotation, Visualization and Integrated Discovery? Although DAVID's typical output is not exactly like that, it is getting close.

From where did you obtain the files? - why not ask the source?

ADD REPLYlink written 10 months ago by Kevin Blighe33k

DAVID is not able to map all my UniProt IDs. It misses a lot of them. I have around 1000 proteins in each list and I have got 7 of them

ADD REPLYlink modified 10 months ago • written 10 months ago by vipulbatra.pu0

Okay, and where did you obtain or see this data output? Did you inquire to the source?

ADD REPLYlink written 10 months ago by Kevin Blighe33k
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