Question: How can I use BALIBASE as a benchmark (on line)
1
gravatar for sallyzaki70
2.3 years ago by
sallyzaki7010
sallyzaki7010 wrote:

Earlier I asked a question of how i compare between(clustal/t-coffee/muscle) How can i use BALIBASE to make comparison between (t-coffee,clustal,muscle)?step by step plz my work will be on line
1-i used the data set

>seq0
FQTWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKF
>seq1
KYRTWEEFTRAAEKLYQADPMKVRVVLKYRHCDGNLCIKVTDDVVCLLYRTDQAQDVKKIEKFHSQLMRLME LKVTDNKECLKFKTDQAQEAKKMEKLNNIFFTLM
>seq2
EEYQTWEEFARAAEKLYLTDPMKVRVVLKYRHCDGNLCMKVTDDAVCLQYKTDQAQDVKKVEKLHGK
>seq3
MYQVWEEFSRAVEKLYLTDPMKVRVVLKYRHCDGNLCIKVTDNSVCLQYKTDQAQDVK
>seq4
EEFSRAVEKLYLTDPMKVRVVLKYRHCDGNLCIKVTDNSVVSYEMRLFGVQKDNFALEHSLL
>seq5
SWEEFAKAAEVLYLEDPMKCRMCTKYRHVDHKLVVKLTDNHTVLKYVTDMAQDVKKIEKLTTLLMR
>seq6
FTNWEEFAKAAERLHSANPEKCRFVTKYNHTKGELVLKLTDDVVCLQYSTNQLQDVKKLEKLSSTLLRSI
>seq7
SWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFF
>seq8
SWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAKKMEKLNNIFFTLM
>seq9
KNWEDFEIAAENMYMANPQNCRYTMKYVHSKGHILLKMSDNVKCVQYRAENMPDLKK
>seq10
FDSWDEFVSKSVELFRNHPDTTRYVVKYRHCEGKLVLKVTDNHECLKFKTDQAQDAKKMEK

2-used the online page of (clustal/t-coffee/muscle)
3-get the output
4-then i used these outputs an an input in scorecones server

i want to know the next step exactly how can i use BALIBASE to compare between (clustal/t-coffee/muscle) as i will draw a curve between the output of (clustal/t-coffee/muscle/balibase) the nearest one to balibase will be the best and where can i put the input (i want to work online)in balibase how can i align with BALIBASE

sequencing alignment • 1.0k views
ADD COMMENTlink modified 2.2 years ago by Biostar ♦♦ 20 • written 2.3 years ago by sallyzaki7010

Earlier I asked a question of how i compare between(clustal/t-coffee/muscle

please validate the answer if it's working. (green tick on the left)

ADD REPLYlink written 2.3 years ago by Pierre Lindenbaum128k

thank you ,, it is really working now

ADD REPLYlink written 2.3 years ago by sallyzaki7010
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