Question: How can I use BALIBASE as a benchmark (on line)
1
15 months ago by
sallyzaki7010
sallyzaki7010 wrote:

Earlier I asked a question of how i compare between(clustal/t-coffee/muscle) How can i use BALIBASE to make comparison between (t-coffee,clustal,muscle)?step by step plz my work will be on line
1-i used the data set

``````>seq0
>seq1
>seq2
EEYQTWEEFARAAEKLYLTDPMKVRVVLKYRHCDGNLCMKVTDDAVCLQYKTDQAQDVKKVEKLHGK
>seq3
MYQVWEEFSRAVEKLYLTDPMKVRVVLKYRHCDGNLCIKVTDNSVCLQYKTDQAQDVK
>seq4
EEFSRAVEKLYLTDPMKVRVVLKYRHCDGNLCIKVTDNSVVSYEMRLFGVQKDNFALEHSLL
>seq5
SWEEFAKAAEVLYLEDPMKCRMCTKYRHVDHKLVVKLTDNHTVLKYVTDMAQDVKKIEKLTTLLMR
>seq6
FTNWEEFAKAAERLHSANPEKCRFVTKYNHTKGELVLKLTDDVVCLQYSTNQLQDVKKLEKLSSTLLRSI
>seq7
SWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFF
>seq8
>seq9
KNWEDFEIAAENMYMANPQNCRYTMKYVHSKGHILLKMSDNVKCVQYRAENMPDLKK
>seq10
FDSWDEFVSKSVELFRNHPDTTRYVVKYRHCEGKLVLKVTDNHECLKFKTDQAQDAKKMEK
``````

2-used the online page of (clustal/t-coffee/muscle)
3-get the output
4-then i used these outputs an an input in scorecones server

i want to know the next step exactly how can i use BALIBASE to compare between (clustal/t-coffee/muscle) as i will draw a curve between the output of (clustal/t-coffee/muscle/balibase) the nearest one to balibase will be the best and where can i put the input (i want to work online)in balibase how can i align with BALIBASE

sequencing alignment • 577 views
modified 14 months ago by Biostar ♦♦ 20 • written 15 months ago by sallyzaki7010

Earlier I asked a question of how i compare between(clustal/t-coffee/muscle

please validate the answer if it's working. (green tick on the left)