Question: Is there any alternative to QUAST software to evaluate de novo assembly results?
1
gravatar for oxfordsoccer
2.1 years ago by
oxfordsoccer10
oxfordsoccer10 wrote:

Is there any alternative to QUAST software to evaluate de novo assembly results? I need to check a set/batch of de novo assembled plant contigs to compare data quality of the data computed with various algorithms and chosen k-mers. Thank you.

quast evaluation quality assembly • 1.4k views
ADD COMMENTlink modified 2.1 years ago by Sej Modha4.6k • written 2.1 years ago by oxfordsoccer10
1
gravatar for Sej Modha
2.1 years ago by
Sej Modha4.6k
Glasgow, UK
Sej Modha4.6k wrote:

REAPR and LAP are good alternatives, a more comprehensive list of assembly assessment tools is available on the OmicsTools.

ADD COMMENTlink modified 2.1 years ago • written 2.1 years ago by Sej Modha4.6k
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