Is there any alternative to QUAST software to evaluate de novo assembly results?
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3.8 years ago
oxfordsoccer ▴ 10

Is there any alternative to QUAST software to evaluate de novo assembly results? I need to check a set/batch of de novo assembled plant contigs to compare data quality of the data computed with various algorithms and chosen k-mers. Thank you.

assembly quast evaluation quality • 2.3k views
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3.8 years ago
Sej Modha 5.0k

REAPR and LAP are good alternatives, a more comprehensive list of assembly assessment tools is available on the OmicsTools.

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