I have assembled some metagenomic contigs from some soil samples and have used prodigal to get the amino acid sequences (faa files).
I would like to functional annotate the contigs against kegg, dbcan, and pfam. What programs can I use to blast against these database? I can't use the web based database as my files are too large.
Afterwards I would like to quantify the annotated genes but I have no idea which programs to use.
Thank you for your time.