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Question: Convert tree confidence values to integers
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gravatar for roussine
14 months ago by
roussine • 10
roussine • 10 wrote:

Dear all, can anyone share if there is a command-line utility for UNIX that would convert bootstrap/confidence values in trees from fractions (0-1) to integers (1-100)? Keeping intact branch lengths and OTU names.
Thanks a lot in advance.
bootstrap tree confidence • 369 views
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modified 14 months ago • written 14 months ago by roussine • 10

Alex - thanx indeed for this advice

ADD REPLY • link written 14 months ago by roussine • 10
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gravatar for Alex Reynolds
14 months ago by
Alex Reynolds ♦ 28k
Seattle, WA USA
Alex Reynolds ♦ 28k wrote:

If your tree file is text-formatted, you could use awk to convert fractions to percentage values, adding some logic to test for errors, e.g.:

$ echo "0.123" | awk '{ r=int(100*$0); if((r>=0)&&(r<=100)){ print r; } else { print "error"; exit(-1); } }'
ADD COMMENT • link modified 14 months ago • written 14 months ago by Alex Reynolds ♦ 28k
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