Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Question: Convert tree confidence values to integers
0
gravatar for roussine
21 months ago by
roussine • 10
roussine • 10 wrote:

Dear all, can anyone share if there is a command-line utility for UNIX that would convert bootstrap/confidence values in trees from fractions (0-1) to integers (1-100)? Keeping intact branch lengths and OTU names.
Thanks a lot in advance.
bootstrap tree confidence • 495 views
ADD COMMENT • link •
modified 21 months ago • written 21 months ago by roussine • 10

Alex - thanx indeed for this advice

ADD REPLY • link written 21 months ago by roussine • 10
0
gravatar for Alex Reynolds
21 months ago by
Alex Reynolds ♦ 29k
Seattle, WA USA
Alex Reynolds ♦ 29k wrote:

If your tree file is text-formatted, you could use awk to convert fractions to percentage values, adding some logic to test for errors, e.g.:

$ echo "0.123" | awk '{ r=int(100*$0); if((r>=0)&&(r<=100)){ print r; } else { print "error"; exit(-1); } }'
ADD COMMENT • link modified 21 months ago • written 21 months ago by Alex Reynolds ♦ 29k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 927 users visited in the last hour