I have affymetrix SNP array data and exome data for same tumor samples. I want to run Pyclone for clonal evolution experiment. I identified somatic mutations in each tumor samples using varscan2. As per Pyclone requirement, I need to input these mutations along with parental copy number information. My question is to how to infer allele specific copy number from either exome sequencing or SNP array data? I need to populate major allele, minor allele and genotype information for each mutation. Kindy help.
Question: Genotype information required in Clonality analysis using Pyclone
2.1 years ago by
nilesh.gardi2688 • 0
nilesh.gardi2688 • 0 wrote:
ADD COMMENT • link •
Please log in to add an answer.
Powered by Biostar version 2.3.0
Traffic: 2019 users visited in the last hour