SNP & INDELs

Question

[krishnan0680]

Hi all,

From a DNA seq experiment I have identified some SNP's and INDEL's. If I wanted to show them along the chromosomes how can I do it?

Thanks all,

K

[ATpoint]

Load the VCF into the IGV browser. If you want a more elaborate answer, please ask in more detail, especially how exactly you want to visualize them and what the final goal is.

[krishnan0680]

HI I have identified the SNPs and INDELs in my replicates..But now I wanted to show them in one chromosome...HOw can I do it? Thanks, K

Answer 1

[krishnan0680]

Basically what I wanted to do is for a presentation how can I show it in a figure to the audiences?

Best, K