Hi, I am trying to convert bed/bim/fam files to vcf file using plink. However, I found that some alleles orders changed. For example, the allele order of rs1877179 in bim file is G/A, but changed to A/G in vcf file. But I need keep the same allele order between bim file and vcf file. I have tried add "--keep-allele-order", but this command did not work. So, what can I do?
Question: How to keep the same alleles order between bim file and vcf file?
7 months ago by
jiumeng66 • 30
jiumeng66 • 30 wrote:
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