I am trying to get the roc results for various tools by using
wgsim tool which I at http://lh3lh3.users.sourceforge.net/alnROC.shtml. I tried the following command
wgsim_eval.pl alneval -ag50 results.sam > results.roc and I got something like
255 51557 3890, sometimes
255 3624 1190. I know that the middle element of the vectors i.e
3634 is number of reads aligned, though not sure about the other elements. Can anyone help in interpreting the results and how to plot a roc curve for that?
I found a very informative post here http://research.cs.wisc.edu/wham/comparison-using-wgsim/, which shows
quality =255 TP= 51557 FP = 3890, is that right?
When algining, I got
51557 reads aligned, but according to the above link should not I get
TP= 51557 + FP = 3890 as a total. How is it??