Tool:simplify the output of a vcf file using
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3.3 years ago
kirannbishwa01 ★ 1.3k

There exits several tools that help mine, filter and manipulate the data from VCF file. I still felt that there was a tool missing that can simplify the data represented in the VCF input file to a table file. Most of the VCF simplification are for more population tags, fields and one sample per VCF. , is a python3 parser that helps simplify the data representation of any type of fields from INFO and FORMAT of every SAMPLE of interest. This tool is written in python3 with cyvcf2 , so it is considerably faster than pyVCF module.

Hope you like it.

vcf table python variants Tool • 774 views

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