Tool: simplify the output of a vcf file using vcf_simplify-v1.py
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gravatar for kirannbishwa01
9 months ago by
United States
kirannbishwa01890 wrote:

There exits several tools that help mine, filter and manipulate the data from VCF file. I still felt that there was a tool missing that can simplify the data represented in the VCF input file to a table file. Most of the VCF simplification are for more population tags, fields and one sample per VCF.

vcf_simplify.py https://github.com/everestial/vcf_simplify , is a python3 parser that helps simplify the data representation of any type of fields from INFO and FORMAT of every SAMPLE of interest. This tool is written in python3 with cyvcf2 https://github.com/brentp/cyvcf2/ , so it is considerably faster than pyVCF module.

Hope you like it.

variants tool python table vcf • 371 views
ADD COMMENTlink written 9 months ago by kirannbishwa01890
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