Tool: simplify the output of a vcf file using
gravatar for kirannbishwa01
22 days ago by
United States
kirannbishwa01720 wrote:

There exits several tools that help mine, filter and manipulate the data from VCF file. I still felt that there was a tool missing that can simplify the data represented in the VCF input file to a table file. Most of the VCF simplification are for more population tags, fields and one sample per VCF. , is a python3 parser that helps simplify the data representation of any type of fields from INFO and FORMAT of every SAMPLE of interest. This tool is written in python3 with cyvcf2 , so it is considerably faster than pyVCF module.

Hope you like it.

variants tool python table vcf • 128 views
ADD COMMENTlink written 22 days ago by kirannbishwa01720
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1721 users visited in the last hour