Question: Recommendation of 3D protein structure prediction softwares
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gravatar for Alec Watanabe
18 months ago by
Alec Watanabe60 wrote:

Hello guys!

I know I can pretty much search for prediction softwares on the Internet, but I want to know your personal opinion and professional experiences with 3D protein prediction softwares. Web-based would be preferable, but standalone is okay. Which software do you recommend? I have a set of proteins that need to have their 3D structure predicted for a posterior docking analysis. Thank you in advance.

protein modelling 3d software • 488 views
ADD COMMENTlink modified 18 months ago by jrj.healey13k • written 18 months ago by Alec Watanabe60
0
gravatar for Kevin Blighe
18 months ago by
Kevin Blighe47k
Kevin Blighe47k wrote:

Please see my suggestions here under 'Protein modelling': A: pathogenicity predictors of cancer mutations

There are numerous algorithms available, all requiring academic / not-for-profit affiliations.

Kevin

ADD COMMENTlink written 18 months ago by Kevin Blighe47k
1

Thank you. I will read their documentations and check which fulfills my necessities.

ADD REPLYlink written 18 months ago by Alec Watanabe60
0
gravatar for jrj.healey
18 months ago by
jrj.healey13k
United Kingdom
jrj.healey13k wrote:

The I-TASSER suite and Phyre are among 2 of the best I've used.

SwissModel and MODELLER are also pretty good/extensively used from what I hear, though I've no experience with them personally.

ADD COMMENTlink written 18 months ago by jrj.healey13k

Thank you. The software I usually utilize is called MHOLline, but unfortunately it's offline due to maintenance reasons. I'll check the ones you listed,

ADD REPLYlink written 18 months ago by Alec Watanabe60
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