CIRCexplorer2: Exon count
0
0
Entering edit mode
4.4 years ago
k.mamoud ▴ 10

Dear all

I am using CIRCexplorer2, to align and to find circRNA in mouse. I would like to do some differential expressiona analysis by using the exons that have been used to make my circRNA.

I would lkie to know which file I sould use to get the exons that have been used for each of my circRNA. And then where I can find the number of reads that are belonging to each of my exon, if it is possible?

Best regards

Mohamed

circRNA RNAseq count diffexp • 1.7k views
ADD COMMENT
1
Entering edit mode

Hi,

When you will run CIRCexplorer2 it will give you a file name "circularRNA_known.txt" which will contain all information related to circular RNA and the read counts.

Column number "10" will give you information related to "Exon_count" and column number "13" will give you info related to read count of that particular exon.

Hoping it will help you.

ADD REPLY
0
Entering edit mode

I have the same question. Any ideas?

ADD REPLY

Login before adding your answer.

Traffic: 1914 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6