Question: How to annotate peaks inside TADs and annotated with Gene expression?
gravatar for carlosalfonsogonzalez6
20 months ago by
carlosalfonsogonzalez610 wrote:


I have a dataset of Chip-seq and RNA-seq experiments, there's also available HI-C data from the same stage and condition, I would like to annotate the nearest gene that is within TAD boundaries, Which method would you suggest to do this kind of analysis? I'm doing it just by annotating both coordinates form chip and RNA seq in same "clusters" and then annotated by nearby gene intra-tad. If there's a current workflow you know or some library please comment.

Thank you!

rna-seq chip-seq hi-c • 541 views
ADD COMMENTlink written 20 months ago by carlosalfonsogonzalez610
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1960 users visited in the last hour