Question: MATLAB Volcano Plot
0
gravatar for bikash2510
20 months ago by
bikash251030
bikash251030 wrote:

Whenever i am trying to plot volcano plot in MATLAB the plot show zero unregulated data. I am taking two sample GEO- GSE73486.

ADD COMMENTlink modified 20 months ago • written 20 months ago by bikash251030

Don't use MATLAB. User R.

And check this tutorial - Repel overlapping text labels in ggplot2

ADD REPLYlink written 20 months ago by venu6.3k

No I want to Use MATLAB, i had already used R but in MATLAB volcano plot are generated with more detailed. So any one having idea about MATLAB volcano plot than please suggest me.

ADD REPLYlink written 20 months ago by bikash251030

Please provide a reproducible example with all the code used.

ADD REPLYlink written 20 months ago by Michael Dondrup46k

mavolcanoplot(dependentData, independentData, pvalues,... 'Labels', probesetIDs)![Volcano Plot![1]

ADD REPLYlink written 20 months ago by bikash251030

Volcano PLot

ADD REPLYlink written 20 months ago by bikash251030

So is this your final volcano plot?

ADD REPLYlink written 20 months ago by venu6.3k

Yes But it only showing down regulated.

ADD REPLYlink written 20 months ago by bikash251030

In MATLAB we need to take Data X , Data Y and P Values, but i am cofused about the Data X and Y(which data should i take)

ADD REPLYlink written 20 months ago by bikash251030

Hello, please do not add additional information as answers. Read posts under https://www.biostars.org/t/how-to/

ADD REPLYlink written 20 months ago by RamRS24k
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