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6.2 years ago

bikash2510
▴
30

Whenever I am trying to plot volcano plot in MATLAB the plot show zero unregulated data. I am taking two sample GEO- GSE73486.

Don't use MATLAB. User

`R`

.And check this tutorial - Repel overlapping text labels in ggplot2

No I want to Use MATLAB, i had already used R but in MATLAB volcano plot are generated with more detailed. So any one having idea about MATLAB volcano plot than please suggest me.

Please provide a reproducible example with all the code used.

mavolcanoplot(dependentData, independentData, pvalues,... 'Labels', probesetIDs)![Volcano Plot

`![1]`

So is this your final volcano plot?

Yes But it only showing down regulated.

In MATLAB we need to take Data X , Data Y and P Values, but i am cofused about the Data X and Y(which data should i take)

Hello, please do not add additional information as answers. Read posts under https://www.biostars.org/t/how-to/