MATLAB Volcano Plot
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6.2 years ago
bikash2510 ▴ 30

Whenever I am trying to plot volcano plot in MATLAB the plot show zero unregulated data. I am taking two sample GEO- GSE73486.

Microarray r RNA-Seq genome • 3.5k views
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Don't use MATLAB. User R.

And check this tutorial - Repel overlapping text labels in ggplot2

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No I want to Use MATLAB, i had already used R but in MATLAB volcano plot are generated with more detailed. So any one having idea about MATLAB volcano plot than please suggest me.

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Please provide a reproducible example with all the code used.

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mavolcanoplot(dependentData, independentData, pvalues,... 'Labels', probesetIDs)![Volcano Plot![1]

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Volcano PLot

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So is this your final volcano plot?

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Yes But it only showing down regulated.

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In MATLAB we need to take Data X , Data Y and P Values, but i am cofused about the Data X and Y(which data should i take)

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Hello, please do not add additional information as answers. Read posts under https://www.biostars.org/t/how-to/

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