Question: MATLAB Volcano Plot

0

bikash2510 •

**30**wrote:Whenever i am trying to plot volcano plot in MATLAB the plot show zero unregulated data. I am taking two sample GEO- GSE73486.

Question: MATLAB Volcano Plot

0

bikash2510 • **30** wrote:

Whenever i am trying to plot volcano plot in MATLAB the plot show zero unregulated data. I am taking two sample GEO- GSE73486.

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Don't use MATLAB. User

`R`

.And check this tutorial - Repel overlapping text labels in ggplot2

6.3kNo I want to Use MATLAB, i had already used R but in MATLAB volcano plot are generated with more detailed. So any one having idea about MATLAB volcano plot than please suggest me.

30Please provide a reproducible example with all the code used.

46kmavolcanoplot(dependentData, independentData, pvalues,... 'Labels', probesetIDs)![Volcano Plot

`![1]`

3030So is this your final volcano plot?

6.3kYes But it only showing down regulated.

30In MATLAB we need to take Data X , Data Y and P Values, but i am cofused about the Data X and Y(which data should i take)

30Hello, please do not add additional information as answers. Read posts under https://www.biostars.org/t/how-to/

24k