Question: VCFtools outputs in windows
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gravatar for jrangellopez1
6 months ago by
jrangellopez10 wrote:

Hello, I'm trying to extract summary information from a VCF file using VCFtools. I would like to extract this information in windows. For the nucleotide diversity I can use --window-pi and for Fst --fst-window-size. These two option give me what I need.

But, for statistics like site depth (--site-depth) I haven't been able to find an alternative to extract this information in windows.

Any suggestion on how to do it with VCFtools or with other softwares?

Thanks

snp sequence genome • 329 views
ADD COMMENTlink written 6 months ago by jrangellopez10
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