I want to do a differential coexpression analysis to a microarray data. My data have rows for genes and columns for conditions. 30 control and 28 disease columns.
I can build coexpression network for control and disease but I cannot find differentially coexpressed genes.
Also, I checked some packages such as WGCNA but I think they don't take expression data as input.
Anyone has any advice, tutorial, software or another package to do it?