Question: How to extract all ONT reads that connect/overlaps two or more contigs ?
1
gravatar for BioGeek
17 months ago by
BioGeek140
BioGeek140 wrote:

I want to focus on all those reads that connect two or more contigs. How to extract ONLY those nanopore reads ?

ADD COMMENTlink written 17 months ago by BioGeek140

Did you map your reads? How?

ADD REPLYlink written 17 months ago by h.mon27k

mapping is done by minimap2

ADD REPLYlink written 17 months ago by BioGeek140
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