I am trying to run GOseq from the bioconductor package in R (via the Trinity pipeline). And get the following error:
Error: package or namespace load failed for ‘GO.db’: .onLoad failed in loadNamespace() for 'GO.db', details: call: NULL error: C stack usage 7969536 is too close to the limit
So there seems to be a problem with loading GO.db. Of course I googled but only found solutions in terms of using the latest R, Bioconductor and RSQLite versions. I updated all, but the error remained the same:
version.string  "R version 3.4.3 (2017-11-30)"
library(BiocInstaller) Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help
RSQLite version = 2.0
Is there a different approach to solve this error?