Subset DGEList by treatment-specific expression
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Entering edit mode
6.1 years ago
fcamus • 0

Hi all,

I am working with expression data and comparing males and female gene expression on two different diets (using edgeR). The first thing I would like to do is separate my DGEList element into three components.

  • genes that are only expressed in females
  • genes that are only expressed in males
  • genes that are expressed in both sexes

Most genes are expressed in both sexes, but some are only in males while others are only in females. I would like to analyse these types of genes separately... and how these different gene seta respond to diet.

thanks,

cpm(dgList)>0.5

RNA-Seq edgeR • 1.6k views
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