I have problems to read a .txt file in Plink (I am completely new to this software). I want to clump SNPs and used the following code:
plink --bfile ../Post --clump IQ.txt --clump-kb 250 --clump-r2 0.1 --clump-p1 0.5 --clump-p2 0.005 --out Final
Post is my data file (.bed, .fam, .bim) and IQ.txt is a txt file containing GWAS data. I have all files in the same folder (including the plink.exe), and I can read the Post file, but then I always get the error that there exists no IQ.txt file... I don´t understand why, or how to change the code??
Would be really happy if someone can help!