Question: What is the unit of TCGA RNA-seq data downloaded from cBioPortal?
1
gravatar for Amy
2.5 years ago by
Amy20
Amy20 wrote:

Hi,

Many thanks in advance! I downloaded RNA-seq data of lung adenocarcinoma from cBioPortal: http://www.cbioportal.org/study?id=luad_tcga_pub#summary

This data includes the file entitled data_RNA_Seq_v2_expression_median.txt and my question is what is the unit of figures included in this file??

I checked the description about this file included in the downloaded data and also spent hours to figure out if it's RPKM, read count etc, but couldn't find a clue. Any comment would be greatly appreciated!!!

Thank you so much,

Amy

rna-seq • 2.6k views
ADD COMMENTlink modified 2.5 years ago by Kevin Blighe65k • written 2.5 years ago by Amy20
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