Question: BWA error [bwt_restore_sa]
0
gravatar for sarahkhanishere
2.2 years ago by
sarahkhanishere0 wrote:

Index FASTA genome:

bwa index hg19.fasta

hg19.fasta hg19.fasta.amb hg19.fasta.ann hg19.fasta.bwt hg19.fasta.pac

Aligning:

bwa mem hg19.fasta IonXpress_001.fastq > IonXpress_001.sam

[bwt_restore_sa] fail to open file 'reference/hg19.fasta.sa' : No such file or directory

next-gen • 707 views
ADD COMMENTlink modified 2.2 years ago by Arindam Ghosh250 • written 2.2 years ago by sarahkhanishere0
1
gravatar for Arindam Ghosh
2.2 years ago by
Arindam Ghosh250
India
Arindam Ghosh250 wrote:

Please recheck for the location of the file reference/hg19.fasta.sa.

ADD COMMENTlink written 2.2 years ago by Arindam Ghosh250
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