Question: Where I can download separate complete human chromosome genomes in GenBank format to do alignment?
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gravatar for mathisdead
9 months ago by
mathisdead10
mathisdead10 wrote:

Where I can download separate complete human chromosome genomes in GenBank format to do alignment? I could find them in FASTA, need full GenBank format with annotation.

genbank human annotation genome • 475 views
ADD COMMENTlink modified 9 months ago by a.zielezinski8.5k • written 9 months ago by mathisdead10

I'm pretty sure that you don't need genbank for alignment, why don't you use fasta?

Don't forget to follow up on your previous questions and mark answers as accepted if your issue is solved.

ADD REPLYlink modified 9 months ago • written 9 months ago by WouterDeCoster35k

mathisdead : If this past question (How to further process and annotate VCF files derived from mapping a patient`s whole genome FASTQs to a separate genes GenBank (.gbk) files? ) is related to this then using chromosomes in genobank format is not the way to go.

ADD REPLYlink modified 9 months ago • written 9 months ago by genomax59k
1
gravatar for a.zielezinski
9 months ago by
a.zielezinski8.5k
a.zielezinski8.5k wrote:

You can download separate complete human chromosomes (in GenBank format) from NCBI FTP.

ADD COMMENTlink modified 9 months ago • written 9 months ago by a.zielezinski8.5k
1

RefSeqGene is a set of genomic records for individual clinically-relevant genes, not whole chromosomes. Genome annotation in GenBank flatfile format is available at: ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Homo_sapiens/all_assembly_versions/GCF_000001405.37_GRCh38.p11/GCF_000001405.37_GRCh38.p11_genomic.gbff.gz

ADD REPLYlink written 9 months ago by tdmurphy110

You're right! I thought im in RefSeq directory, but accidentally entered RefSeqGene. I fixed my answer.

ADD REPLYlink written 9 months ago by a.zielezinski8.5k
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