Align and print steam-loop
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6.6 years ago
sacha ★ 2.4k

Hi,

Do you know which tool to use to generate and print stem-loop from from a short sequence ?

For instance, using the following mir sequence:

>hsa-mir-7106 MI0022957
GCUUCUGGGAGGAGGGGAUCUUGGGAGUGAUCCCAACAGCUGAGCUCCCUGAAUCCCUGUCCCAG

I would like to print the following alignement

   gcuu      gga      cuu      gauccc 
5'     cuggga   ggggau   gggagu      a
       ||||||   ||||||   ||||||      a
3'     gacccu   ucccua   cccucg      c
   ----      --g      agu      agucga
mir alignment loop • 1.3k views
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That's perfect ! Thanks for the quick answer

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