Question: how would I find SNPs that are highly polymorphic between populations in dbSNP
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gravatar for b10hazard
9 months ago by
b10hazard20
United States
b10hazard20 wrote:

Hi there,

I’m trying to get a vcd file containing SNPs that are highly polymorphic by population. Does anything like this exist in dbSNP? I’m guessing I would want to find SNPs with high fixation indexes between populations but I have no idea how to do this. Any advice would be great. Thanks!

snp dbsnp allele ncbi • 213 views
ADD COMMENTlink modified 9 months ago by agata88760 • written 9 months ago by b10hazard20
0
gravatar for agata88
9 months ago by
agata88760
Poland
agata88760 wrote:

This may help: How To Perform A Fst (Fixation Index) Calculation Over A Vcf File Using A Sliding Window?

You can download dbSNP database in vcf file and try vcftools to select those SNP of your interest.

Best, Agata

ADD COMMENTlink modified 9 months ago • written 9 months ago by agata88760
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