I would like to automate the following process that uses GEO2R to analyze gene expression. For each contig I provide, this is the workflow I follow:
- browse to https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE36545
- click Profile Graph
- Enter ID: assembledIsotigs_Contig9526
- click Set
- click Sample Values
- copy results from pop-up window:
Instead of going through the above workflow for each contig, is it possible to automate the process using something like the getGEO() function from Bioconductor?