Question: GEO2R Gene Expression
gravatar for fire_water
9 months ago by
United States
fire_water80 wrote:


I would like to automate the following process that uses GEO2R to analyze gene expression. For each contig I provide, this is the workflow I follow:

  1. browse to
  2. click Profile Graph
  3. Enter ID: assembledIsotigs_Contig9526
  4. click Set
  5. click Sample Values
  6. copy results from pop-up window:

enter image description here

Instead of going through the above workflow for each contig, is it possible to automate the process using something like the getGEO() function from Bioconductor?


gene • 190 views
ADD COMMENTlink modified 9 months ago • written 9 months ago by fire_water80
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1711 users visited in the last hour