Question: GEO2R Gene Expression
2
gravatar for fire_water
3 months ago by
fire_water70
United States
fire_water70 wrote:

Hello,

I would like to automate the following process that uses GEO2R to analyze gene expression. For each contig I provide, this is the workflow I follow:

  1. browse to https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE36545
  2. click Profile Graph
  3. Enter ID: assembledIsotigs_Contig9526
  4. click Set
  5. click Sample Values
  6. copy results from pop-up window:

enter image description here

Instead of going through the above workflow for each contig, is it possible to automate the process using something like the getGEO() function from Bioconductor?

Thanks!

gene • 100 views
ADD COMMENTlink modified 3 months ago • written 3 months ago by fire_water70
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