Question: DNA Methylation Analysis
0
gravatar for caspase8mach
2.3 years ago by
caspase8mach10
caspase8mach10 wrote:

Hello All,

I am in the process of analyzing huge DNA methylation data and your help on this will be very helpful.

I have various .txt files, each file having 1 column and approx 450K rows representing 450K CpGs which are either methylated or not.

What kind of tools / scripts / resources (R/Python) can I use to analyze multiple such .txt files?

Thanks a lot.

ADD COMMENTlink written 2.3 years ago by caspase8mach10
1

Perhaps use something like methylkit (https://bioconductor.org/packages/release/bioc/html/methylKit.html )

ADD REPLYlink written 2.3 years ago by genomax85k
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