Error: reduced dimension space doesn't match the dimension of the CellDataSet object?
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6.1 years ago
John ▴ 270

Hi,

I used DDRTree to reduce dimension( in Monocle).

HSMM <- reduceDimension(HSMM, max_components = 2, norm_method = 'log',
  reduction_method = 'DDRTree',
  residualModelFormulaStr = NULL,
  verbose = T)

I get the following error while clustering cells

> HSMM <- clusterCells(HSMM, num_clusters = 4)
Error in clusterCells(HSMM, num_clusters = 4) : 
  reduced dimension space doesn't match the dimension of the CellDataSet object

Can anyone please help in this, I am new to R

RNA-Seq sequence R software error next-gen • 2.8k views
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