Question: Error: reduced dimension space doesn't match the dimension of the CellDataSet object?
1
gravatar for sciencer
10 months ago by
sciencer70
sciencer70 wrote:

Hi,

I used DDRTree to reduce dimension( in Monocle).

HSMM <- reduceDimension(HSMM, max_components = 2, norm_method = 'log',
  reduction_method = 'DDRTree',
  residualModelFormulaStr = NULL,
  verbose = T)

I get the following error while clustering cells

> HSMM <- clusterCells(HSMM, num_clusters = 4)
Error in clusterCells(HSMM, num_clusters = 4) : 
  reduced dimension space doesn't match the dimension of the CellDataSet object

Can anyone please help in this, I am new to R

ADD COMMENTlink modified 3 months ago by Biostar ♦♦ 20 • written 10 months ago by sciencer70
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