Question: gtf file and rnaseq
1
gravatar for qudrat
22 months ago by
qudrat70
NATIONAL INSTITUTE OF IMMUNOLOGY, INDIA
qudrat70 wrote:

Hello all I was wondering to ask whether there are any method to find common transcripts between two gtf file? I have produced gtf files from StringTie and I am interested in to proceed forward with common transcripts.

rna-seq alignment • 615 views
ADD COMMENTlink modified 22 months ago by Buffo1.8k • written 22 months ago by qudrat70
1
gravatar for Buffo
22 months ago by
Buffo1.8k
Buffo1.8k wrote:

You can also create the transcript (and quantification) list with ballgown, then compare the lists.

ADD COMMENTlink written 22 months ago by Buffo1.8k
0
gravatar for ta_awwad
22 months ago by
ta_awwad240
Frankfurt am Main
ta_awwad240 wrote:

you can do that simply using awk or fgrep

ADD COMMENTlink modified 22 months ago • written 22 months ago by ta_awwad240
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