I stated with the wget function:
I think my problem deals with the gatk-220.127.116.11.zip file. After I unzip the file I can view the contents; however, no where do I see the GenomeAnalysisTK.jar file? I only see the two gatk-package jar files - listed below.
gatk-package-18.104.22.168-spark.jar and gatk-package-22.214.171.124-local.jar
I'm expecting to find the GenomeAnalysisTK.jar file.
Perhaps my instructions are a bit old?