I need to merge 10 microarray datasets of the same platform. Any hint how to do it? Is there any R package for this? I found about inSilicoDb but I guess it is not in use anymore.
2 of the datasets are this and this.
I analyse different datasets separately and then run metaanlysis over the estimated mean/sd of log fold changes. There are other approaches, for example, you can column-bind the datasets together and fit a huge model if your limma skills are up to it and the datasets really are from the same platform. There's a tool called mergeMaid that will help if they aren't from the same platform.