need java code implementation for the blastn steps to search for DNAseq, or java code for blosum matrix or any substitution matrix ?

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6.1 years ago

emadelhewihy • 0

need java code implementation for the blastn stps to search, or java code for blosum matrix ?

java DnaSeq blosum_matrix alignment • 1.5k views

ADD COMMENT • link 6.1 years ago by emadelhewihy • 0

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Please do some due diligence on your part.

Asking for code to do x is not going to sit well with members here. You need to show some effort on your part.
If you are looking for ready code then use a web search engine. e.g. I can see multiple instances of Java code examples for blosum matrix.

ADD REPLY • link 6.1 years ago by GenoMax 141k

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I have do searches but i didnot have luck

ADD REPLY • link 6.1 years ago by emadelhewihy • 0

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" for the blastn stps to search, or java code for blosum matrix "

sorry for my French but this sentence is impossible to understand. I need some verbs. "(I need) java code for blosum matrix" What does it mean ? here is one : https://github.com/DarkAlf/sequence/blob/54bb559ee5649ca915a60b4b0595201ecbe508f0/src/sequencing/Blosum.java

ADD REPLY • link 6.1 years ago by Pierre Lindenbaum 161k

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thanks <3 , sorry for my fault

ADD REPLY • link 6.1 years ago by emadelhewihy • 0

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Have you looked a BioJava?

ADD REPLY • link 6.1 years ago by d-cameron ★ 2.9k

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no , please comment by the link of it !!

ADD REPLY • link 6.1 years ago by emadelhewihy • 0

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ADD REPLY • link 6.1 years ago by Devon Ryan 104k

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Have you looked at google?

ADD REPLY • link 6.1 years ago by WouterDeCoster 47k

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