Question: degradom sequence lenght
gravatar for Sam
19 months ago by
Sam130 wrote:

Dear All

I have some problem with degradom files, the sequence length in raw reads file is 50 base , but in clean reads file (after removing the 3' adaptor) , about 20% of reads still have 50 bp length. is it due to adapator contamination ?


degradom • 438 views
ADD COMMENTlink written 19 months ago by Sam130

This post looks helpful, some links don’t work, so I added 2 new links

StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data

StarScan: a web server for scanning small RNA targets from degradome sequencing data

The StarScan web server is available at But the site doesn;t answer.

This post below discusses a proper read length:

read length of sequence

ADD REPLYlink modified 19 months ago • written 19 months ago by natasha.sernova3.6k
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