Question: degradom sequence lenght
0
gravatar for Sam
13 months ago by
Sam100
Sam100 wrote:

Dear All

I have some problem with degradom files, the sequence length in raw reads file is 50 base , but in clean reads file (after removing the 3' adaptor) , about 20% of reads still have 50 bp length. is it due to adapator contamination ?

Thanks

degradom • 317 views
ADD COMMENTlink written 13 months ago by Sam100
1

This post looks helpful, some links don’t work, so I added 2 new links

StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data

https://academic.oup.com/nar/article/43/W1/W480/2467966

StarScan: a web server for scanning small RNA targets from degradome sequencing data

The StarScan web server is available at http://mirlab.sysu.edu.cn/starscan/. But the site doesn;t answer.

This post below discusses a proper read length:

read length of sequence

ADD REPLYlink modified 13 months ago • written 13 months ago by natasha.sernova3.4k
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