Question: How to parse a dat file into FASTA format?
0
gravatar for yuevine
7 months ago by
yuevine0
yuevine0 wrote:

I downloaded the dat files from Uniprot taxonomic division and I need to use them in FASTA format. Is it complicated to convert or parse dat files into FASTA? Does anyone can know how to do it? Thanks. T_T

ADD COMMENTlink modified 7 months ago by Elisabeth Gasteiger1.5k • written 7 months ago by yuevine0

It is not really clear what kind of data you have downloaded.

See these posts in any case:

How To Download Swiss-Prot .Dat File From Uniprot

Parsing uniprot .dat files

See this site as well:

https://omics.pnl.gov/software/uniprot-dat-file-parser

ADD REPLYlink modified 7 months ago • written 7 months ago by natasha.sernova3.1k
1
gravatar for Elisabeth Gasteiger
7 months ago by
Geneva
Elisabeth Gasteiger1.5k wrote:

I recommend that you have a look at these threads and the answers I gave there:

How to makeblastdb Uniprot's Taxonomic Divisions? A: How to makeblastdb Uniprot's Taxonomic Divisions?

Converting Uniprot File to a Fasta File in Perl A: Converting Uniprot File to a Fasta File in Perl

ADD COMMENTlink written 7 months ago by Elisabeth Gasteiger1.5k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1518 users visited in the last hour