Question: How to parse a dat file into FASTA format?
0
gravatar for yuevine
5 weeks ago by
yuevine0
yuevine0 wrote:

I downloaded the dat files from Uniprot taxonomic division and I need to use them in FASTA format. Is it complicated to convert or parse dat files into FASTA? Does anyone can know how to do it? Thanks. T_T

ADD COMMENTlink modified 5 weeks ago by Elisabeth Gasteiger1.4k • written 5 weeks ago by yuevine0

It is not really clear what kind of data you have downloaded.

See these posts in any case:

How To Download Swiss-Prot .Dat File From Uniprot

Parsing uniprot .dat files

See this site as well:

https://omics.pnl.gov/software/uniprot-dat-file-parser

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by natasha.sernova2.9k
1
gravatar for Elisabeth Gasteiger
5 weeks ago by
Geneva
Elisabeth Gasteiger1.4k wrote:

I recommend that you have a look at these threads and the answers I gave there:

How to makeblastdb Uniprot's Taxonomic Divisions? A: How to makeblastdb Uniprot's Taxonomic Divisions?

Converting Uniprot File to a Fasta File in Perl A: Converting Uniprot File to a Fasta File in Perl

ADD COMMENTlink written 5 weeks ago by Elisabeth Gasteiger1.4k
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