Question: any fast PRINSEQ alternative?
0
gravatar for garbanyo
2.6 years ago by
garbanyo0
garbanyo0 wrote:

Hi all, I'm writing a C++ version of PRINSEQ to filter and trim fastq files and I want to do some timing/memory usage comparison with other sequencing QC tools. Is there any tool beside FastQC, Fastx toolkit and the perl version of PRISEQ that I should include?

Thanks a lot

sequencing next-gen sequence • 849 views
ADD COMMENTlink modified 12 months ago by milad eidi0 • written 2.6 years ago by garbanyo0

123Fastq, can do all NGS reads pre-processes fast in a highly interactive graphical user interface.

ADD REPLYlink written 12 months ago by milad eidi0
1
gravatar for WouterDeCoster
2.6 years ago by
Belgium
WouterDeCoster44k wrote:

Have a look at fastp

ADD COMMENTlink written 2.6 years ago by WouterDeCoster44k

will do, thanks a lot

ADD REPLYlink written 2.6 years ago by garbanyo0
1
gravatar for genomax
2.6 years ago by
genomax91k
United States
genomax91k wrote:

bbduk.sh from BBMap suite. Java but multi-threaded and plenty fast for me.

ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by genomax91k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1307 users visited in the last hour