Question: Can I determine ancestral allele based on phylogenetic tree?
0
gravatar for wang.yiguan
10 months ago by
wang.yiguan10
wang.yiguan10 wrote:

Hi, I have the whole genome of 5 species(S1-S5), and I have constructed the phylogenetic tree of the five species as following. And I now also know the sequences of 4 nodes on the tree(N1-N4) using FastML tool.

My question is:

How can I determine the ancestral alleles for S1? Is N4 sequence the ancestral alleles for S1?

Appreciated for your answer!

                                     |----------S1
                          |----------N4
                          |          |-------------S2
                          |
   |----------------------N3
   |                      |----------S3
   |
   N1
   |                   |-------S4
   |-------------------N2
                       |-------S5
  
alignment gene genome • 277 views
ADD COMMENTlink modified 10 months ago by h.mon22k • written 10 months ago by wang.yiguan10
1
gravatar for h.mon
10 months ago by
h.mon22k
Brazil
h.mon22k wrote:

As explained on FastML manual:

Can I determine ancestral allele based on phylogenetic tree?

Yes.

Is N4 sequence the ancestral alleles for S1?

Yes (and for S2).

ADD COMMENTlink written 10 months ago by h.mon22k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1968 users visited in the last hour