Question: How to separe eRNA by orientation from with GRO-SEQ data
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gravatar for ZheFrench
8 months ago by
ZheFrench150
France
ZheFrench150 wrote:

eRNAs are bi-directionally transcribed. I was wondering how to separe them from a bam to make distinct bigwig using orientation and strand appartenance.

erna gro-seq • 292 views
ADD COMMENTlink modified 3 months ago by pr.jan0 • written 8 months ago by ZheFrench150

Do you want to identify bidirectional transcripts ? or want to create a bigwig that displays transcripts in a strand specific manner ?

ADD REPLYlink written 8 months ago by geek_y8.8k

Identify bidirectional transcripts, separe them into two different bam, to make 2 bigwigs to display distinctly depending both orientation.

ADD REPLYlink modified 8 months ago • written 8 months ago by ZheFrench150
0
gravatar for pr.jan
3 months ago by
pr.jan0
pr.jan0 wrote:

I'm also interested on this answer. Did you find a way of doing it, ZheFrench?

ADD COMMENTlink written 3 months ago by pr.jan0
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