Question: How to separe eRNA by orientation from with GRO-SEQ data
0
gravatar for ZheFrench
10 months ago by
ZheFrench190
France
ZheFrench190 wrote:

eRNAs are bi-directionally transcribed. I was wondering how to separe them from a bam to make distinct bigwig using orientation and strand appartenance.

erna gro-seq • 332 views
ADD COMMENTlink modified 5 months ago by pr.jan0 • written 10 months ago by ZheFrench190

Do you want to identify bidirectional transcripts ? or want to create a bigwig that displays transcripts in a strand specific manner ?

ADD REPLYlink written 10 months ago by geek_y9.1k

Identify bidirectional transcripts, separe them into two different bam, to make 2 bigwigs to display distinctly depending both orientation.

ADD REPLYlink modified 10 months ago • written 10 months ago by ZheFrench190
0
gravatar for pr.jan
5 months ago by
pr.jan0
pr.jan0 wrote:

I'm also interested on this answer. Did you find a way of doing it, ZheFrench?

ADD COMMENTlink written 5 months ago by pr.jan0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 781 users visited in the last hour